Event
Bioinformatics Workshop: Bacterial Species Identification
Instructional Team
Prasit Palittapongarnpim
CENMIG, Department of Microbiology, Faculty of Science, Mahidol University
Bangkok, Thailand
Brief Bio
Prof. Prasit Palittapongarnpim received his M.D. with First Class Honors from Mahidol University, a Certificate of Proficiency in Pediatrics from Chiang Mai University, Thailand, and postdoctoral training at the University of Alberta, Canada. He also earned B.Sc. degrees in both Medical Sciences and Mathematics. His main scientific interests are in the molecular biology and genomics of Mycobacterium tuberculosis as well as antimicrobial resistance (AMR). He founded and leads the Pornchai Matangkasombut Center for Microbial Genomics at Mahidol University. He has regularly published research on tuberculosis genomics and AMR and was recognized as a top 1% researcher at Mahidol University in both 2022 and 2023.
He has also worked on antituberculous drug discovery and has been involved in several networks related to emerging disease preparedness and research integrity. Dr. Prasit serves as an editorial board member and reviewer for several journals and funding agencies both in Thailand and internationally. He has also served multiple times as a temporary advisor to the World Health Organization (WHO). To date, he has published more than 120 papers, mostly on tuberculosis, and has held various administrative positions in Thailand. He currently serves as a university council member and a steering committee member for several institutes.
Bharkbhoom Jaemsai
CENMIG, Department of Microbiology, Faculty of Science, Mahidol University
Bangkok, Thailand
Brief Bio
Dr. Bharkbhoom Jaemsai is a researcher at CENMIG, Department of Microbiology, Faculty of Science, Mahidol University. His primary research focuses on the genomics and evolutionary history of human pathogens, with a special emphasis on Mycobacterium tuberculosis. He is also exploring how bioinformatics can be applied to advance genomic research in fungal pathogens.
Wuthiwat Ruangchai
CENMIG, Department of Microbiology, Faculty of Science, Mahidol University
Bangkok, Thailand
Brief Bio
Wuthiwat Ruangchai is a researcher based in Bangkok, Thailand, specializing in microbiology, genomics, and bioinformatics.
His professional focus includes:
Genomic Research: His work frequently involves whole-genome sequencing (WGS) and the analysis of bacterial pathogens, with a significant emphasis on Mycobacterium tuberculosis.
Bioinformatics: He utilizes computational tools and data analysis to study genetic diversity, phylogenetic lineages, and the characterization of clinical isolates.
āļāļēāļĢāļĢāļ°āļāļļāļāļāļīāļāđāļāļāļāļĩāđāļĢāļĩāļĒāļāđāļ§āļĒ 16S rRNA āđāļāļĩāļĒāļāļāļĒāđāļēāļāđāļāļĩāļĒāļ§āļĒāļąāļāđāļāļĩāļĒāļāļāļāļŠāļģāļŦāļĢāļąāļāļāļēāļāļāļāļāļāļļāļāļŦāļĢāļ·āļāđāļĄāđ?
āļŠāļģāļŦāļĢāļąāļāļāļēāļāļ§āļīāļāļąāļĒāđāļĨāļ°āļāļēāļĢāļ§āļīāđāļāļĢāļēāļ°āļŦāđāđāļāļ·āđāļāđāļāļāļąāļāļāļļāļāļąāļāļāļēāļĢāļŦāļēāļĨāļģāļāļąāļāļāļīāļ§āļāļĨāļĩāđāļāđāļāļāđāļāļąāđāļāļāļĩāđāļāļĄ (Whole Genome Sequencing) āđāļāđāļāļĨāļēāļĒāđāļāđāļāļĄāļēāļāļĢāļāļēāļāđāļŦāļĄāđāđāļāļāļēāļĢāļĢāļ°āļāļļāļāļāļīāļāļāļļāļĨāļīāļāļāļĢāļĩāļĒāđāđāļāđāļāļēāļĢāđāļĨāļ·āļāļāđāļāđāđāļāļĢāļ·āđāļāļāļĄāļ·āļāđāļĨāļ°āļāļēāļĢāđāļāļĨāļāļĨāļāļĩāđāļāļđāļāļāđāļāļāļĒāļąāļāđāļāđāļāļāļļāļāļŠāļĢāļĢāļāļŠāļģāļāļąāļāļŠāļģāļŦāļĢāļąāļāļāļąāļāļ§āļīāļāļąāļĒāđāļĨāļ°āļāļąāļāļ§āļīāļāļĒāļēāļĻāļēāļŠāļāļĢāđāļŦāđāļāļāļāļāļīāļāļąāļāļīāļāļēāļĢāļŦāļĨāļēāļĒāļāđāļēāļ
āļĻāļđāļāļĒāđāļāļĩāđāļāļĄāļāļļāļĨāļīāļāļāļĢāļĩāļĒāđ âāļĻāļēāļāļĢāļēāļāļēāļĢāļĒāđāđāļāļĩāļĒāļĢāļāļīāļāļļāļ āļāļēāļĒāđāļāļāļĒāđ āļāļĢāļāļąāļĒ āļĄāļēāļāļąāļāļāļŠāļĄāļāļąāļāļī (Pornchai Matangkasombut Center for Microbial Genomics (CENMIG) āļĢāđāļ§āļĄāļāļąāļ āļ āļēāļāļ§āļīāļāļēāļāļļāļĨāļāļĩāļ§āļ§āļīāļāļĒāļē
āļāļāļ°āļ§āļīāļāļĒāļēāļĻāļēāļŠāļāļĢāđ āļĄāļŦāļēāļ§āļīāļāļĒāļēāļĨāļąāļĒāļĄāļŦāļīāļāļĨ āļāļąāļāļāļēāļĢāļāļķāļāļāļāļĢāļĄāđāļāļīāļāļāļāļīāļāļąāļāļīāļāļēāļĢāđāļĢāļ·āđāļāļ āļāļēāļĢāļĢāļ°āļāļļāļāļāļīāļāļāļāļāđāļāļ·āđāļāļāļļāļĨāļīāļāļāļĢāļĩāļĒāđāļāđāļ§āļĒāļ§āļīāļāļĩāļāļēāļĢāļāļēāļāļāļĩāļ§āļŠāļēāļĢāļŠāļāđāļāļĻ (Bioinformatics Workshop: Bacterial Species Identification)
āļŦāļąāļ§āļāđāļāđāļāļāļēāļĢāļāļķāļāļāļāļĢāļĄ:
âĒ Linux command-line for genomics
âĒ Short- & long-read sequencing data handling
âĒ Genome assembly & annotation
âĒ Various sequence-based methods for bacterial species identification: 16S rRNA genes, Kraken2, ANI & in silico dDDH
âĒ Phylogenomic & species classification
âĒ Handling unknown isolates & proposing novel species
âĒ Species identification in metagenomics data
āļāļēāļĢāļāļāļĢāļĄāļāļļāļāļŦāļąāļ§āļāđāļāļāļĢāļĢāļĒāļēāļĒāđāļāđāļāļ āļēāļĐāļēāđāļāļĒāđāļāļĢāļđāļāđāļāļāļāļēāļĢāļāļĢāļĢāļĒāļēāļĒāļāļ§āļāļāļđāđāļāļąāļāļāļēāļĢāļāļķāļāļāļāļīāļāļąāļāļī āļāļĢāđāļāļĄāļāļĢāļīāļāļēāļĢāđāļŦāđāļāļģāļāļĢāļķāļāļĐāļēāļŦāļĨāļąāļāļāļēāļĢāļāļāļĢāļĄ (Post-workshop Consultative Support) āļŠāļģāļŦāļĢāļąāļāļāļđāđāđāļāđāļēāļĢāđāļ§āļĄāļāļļāļāļāđāļēāļ
āļ§āļąāļāļāļĩāđ: 24â26 āļŠāļīāļāļŦāļēāļāļĄ 2569
āļŠāļāļēāļāļāļĩāđ: āļŦāđāļāļāļāļĢāļ°āļāļļāļĄāļŠāļāļēāļāļāđ āļĄāļāļāļĨāļŠāļļāļ āļāļāļ°āļ§āļīāļāļĒāļēāļĻāļēāļŠāļāļĢāđ āļĄāļŦāļēāļ§āļīāļāļĒāļēāļĨāļąāļĒāļĄāļŦāļīāļāļĨ(āļāļāļēāđāļ)
āļāđāļēāļĨāļāļāļ°āđāļāļĩāļĒāļ:
âĒ āļāļąāļāļĻāļķāļāļĐāļē: 5,000 āļāļēāļ (Early bird) / 6,000 āļāļēāļ (āļāļāļāļī)
âĒ āļāļļāļāļāļĨāļāļąāđāļ§āđāļ: 6,500 āļāļēāļ (Early bird) / 7,500 āļāļēāļ (āļāļāļāļī)
Early bird: āļ āļēāļĒāđāļ 10 āļāļĢāļāļāļēāļāļĄ 2569
āļāļīāļāļĢāļąāļāļŠāļĄāļąāļāļĢāļāļāļāļī: 31 āļāļĢāļāļāļēāļāļĄ 2569
āļāļēāļĢāļāļāļĢāļĄāļāļĩāđāđāļŦāļĄāļēāļ°āļŠāļģāļŦāļĢāļąāļāļāļąāļāļĻāļķāļāļĐāļēāļĢāļ°āļāļąāļāļāļąāļāļāļīāļāļĻāļķāļāļĐāļē āļāļąāļāļ§āļīāļāļąāļĒ āđāļĨāļ°āļāļąāļāļ§āļīāļāļĒāļēāļĻāļēāļŠāļāļĢāđāļŦāđāļāļāļāļāļīāļāļąāļāļīāļāļēāļĢāđāļāļŠāļēāļāļēāļāļļāļĨāļāļĩāļ§āļ§āļīāļāļĒāļēāļāļĨāļīāļāļīāļ āļ§āļīāļāļĒāļēāļĻāļēāļŠāļāļĢāđāļŠāļīāđāļāđāļ§āļāļĨāđāļāļĄ āļāļ§āļēāļĄāļāļĨāļāļāļ āļąāļĒāļāļēāļāļāļēāļŦāļēāļĢāļŦāļĢāļ·āļāļŠāļēāļāļēāļāļ·āđāļāļāļĩāđāļāđāļāļāļāļēāļĢāļāļēāļĢāļĢāļ°āļāļļāļāļāļīāļāļāļļāļĨāļīāļāļāļĢāļĩāļĒāđāļāļĒāđāļēāļāđāļĄāđāļāļĒāļģ
āļŠāļēāļĄāļēāļĢāļāļĨāļāļāļ°āđāļāļĩāļĒāļāđāļāđāļāļēāļāļŠāđāļāļ QR Code āļāļāđāļāļŠāđāļāļāļĢāđ āļŦāļĢāļ·āļ āđāļāđāļēāļāđāļēāļāļĨāļīāļāļāđ https://forms.gle/YFsfSVaYnnLs1bMt6
āļāļīāļāļāđāļāļŠāļāļāļāļēāļĄāļāđāļāļĄāļđāļĨāđāļāļīāđāļĄāđāļāļīāļĄāđāļāđāļāļĩāđ
āļāļĩāđāļĄāļĨ: cenmig.scmi@gmail.com
āđāļāļāļĢāđāđāļāļĢāļĻāļąāļāļāđ: +66 87-358-4255 (K. āļ§āļīāđāļĢāļāļāđ)
Schedule for Bioinformatics Workshop: Bacterial Species Identification
*The schedule can be change in the future.