Event
Bioinformatics Workshop: Bacterial Species Identification

Instructional Team

Prasit Palittapongarnpim

CENMIG, Department of Microbiology, Faculty of Science, Mahidol University

Bangkok, Thailand

Prof. Prasit Palittapongarnpim received his M.D. with First Class Honors from Mahidol University, a Certificate of Proficiency in Pediatrics from Chiang Mai University, Thailand, and postdoctoral training at the University of Alberta, Canada. He also earned B.Sc. degrees in both Medical Sciences and Mathematics. His main scientific interests are in the molecular biology and genomics of Mycobacterium tuberculosis as well as antimicrobial resistance (AMR). He founded and leads the Pornchai Matangkasombut Center for Microbial Genomics at Mahidol University. He has regularly published research on tuberculosis genomics and AMR and was recognized as a top 1% researcher at Mahidol University in both 2022 and 2023.

He has also worked on antituberculous drug discovery and has been involved in several networks related to emerging disease preparedness and research integrity. Dr. Prasit serves as an editorial board member and reviewer for several journals and funding agencies both in Thailand and internationally. He has also served multiple times as a temporary advisor to the World Health Organization (WHO). To date, he has published more than 120 papers, mostly on tuberculosis, and has held various administrative positions in Thailand. He currently serves as a university council member and a steering committee member for several institutes.

Bharkbhoom Jaemsai

CENMIG, Department of Microbiology, Faculty of Science, Mahidol University

Bangkok, Thailand

Dr. Bharkbhoom Jaemsai is a researcher at CENMIG, Department of Microbiology, Faculty of Science, Mahidol University. His primary research focuses on the genomics and evolutionary history of human pathogens, with a special emphasis on Mycobacterium tuberculosis. He is also exploring how bioinformatics can be applied to advance genomic research in fungal pathogens.

Wuthiwat Ruangchai

CENMIG, Department of Microbiology, Faculty of Science, Mahidol University

Bangkok, Thailand

Wuthiwat Ruangchai is a researcher based in Bangkok, Thailand, specializing in microbiology, genomics, and bioinformatics.
His professional focus includes:
Genomic Research: His work frequently involves whole-genome sequencing (WGS) and the analysis of bacterial pathogens, with a significant emphasis on Mycobacterium tuberculosis.
Bioinformatics: He utilizes computational tools and data analysis to study genetic diversity, phylogenetic lineages, and the characterization of clinical isolates.

āļāļēāļĢāļĢāļ°āļšāļļāļŠāļ™āļīāļ”āđāļšāļ„āļ—āļĩāđ€āļĢāļĩāļĒāļ”āđ‰āļ§āļĒ 16S rRNA āđ€āļžāļĩāļĒāļ‡āļ­āļĒāđˆāļēāļ‡āđ€āļ”āļĩāļĒāļ§āļĒāļąāļ‡āđ€āļžāļĩāļĒāļ‡āļžāļ­āļŠāļģāļŦāļĢāļąāļšāļ‡āļēāļ™āļ‚āļ­āļ‡āļ„āļļāļ“āļŦāļĢāļ·āļ­āđ„āļĄāđˆ?

āļŠāļģāļŦāļĢāļąāļšāļ‡āļēāļ™āļ§āļīāļˆāļąāļĒāđāļĨāļ°āļāļēāļĢāļ§āļīāđ€āļ„āļĢāļēāļ°āļŦāđŒāđ€āļŠāļ·āđ‰āļ­āđƒāļ™āļ›āļąāļˆāļˆāļļāļšāļąāļ™āļāļēāļĢāļŦāļēāļĨāļģāļ”āļąāļšāļ™āļīāļ§āļ„āļĨāļĩāđ‚āļ­āđ„āļ—āļ”āđŒāļ—āļąāđ‰āļ‡āļˆāļĩāđ‚āļ™āļĄ (Whole Genome Sequencing) āđ„āļ”āđ‰āļāļĨāļēāļĒāđ€āļ›āđ‡āļ™āļĄāļēāļ•āļĢāļāļēāļ™āđƒāļŦāļĄāđˆāđƒāļ™āļāļēāļĢāļĢāļ°āļšāļļāļŠāļ™āļīāļ”āļˆāļļāļĨāļīāļ™āļ—āļĢāļĩāļĒāđŒāđāļ•āđˆāļāļēāļĢāđ€āļĨāļ·āļ­āļāđƒāļŠāđ‰āđ€āļ„āļĢāļ·āđˆāļ­āļ‡āļĄāļ·āļ­āđāļĨāļ°āļāļēāļĢāđāļ›āļĨāļœāļĨāļ—āļĩāđˆāļ–āļđāļāļ•āđ‰āļ­āļ‡āļĒāļąāļ‡āđ€āļ›āđ‡āļ™āļ­āļļāļ›āļŠāļĢāļĢāļ„āļŠāļģāļ„āļąāļāļŠāļģāļŦāļĢāļąāļšāļ™āļąāļāļ§āļīāļˆāļąāļĒāđāļĨāļ°āļ™āļąāļāļ§āļīāļ—āļĒāļēāļĻāļēāļŠāļ•āļĢāđŒāļŦāđ‰āļ­āļ‡āļ›āļāļīāļšāļąāļ•āļīāļāļēāļĢāļŦāļĨāļēāļĒāļ—āđˆāļēāļ™

āļĻāļđāļ™āļĒāđŒāļˆāļĩāđ‚āļ™āļĄāļˆāļļāļĨāļīāļ™āļ—āļĢāļĩāļĒāđŒ “āļĻāļēāļ•āļĢāļēāļˆāļēāļĢāļĒāđŒāđ€āļāļĩāļĒāļĢāļ•āļīāļ„āļļāļ“ āļ™āļēāļĒāđāļžāļ—āļĒāđŒ āļžāļĢāļŠāļąāļĒ āļĄāļēāļ•āļąāļ‡āļ„āļŠāļĄāļšāļąāļ•āļī (Pornchai Matangkasombut Center for Microbial Genomics (CENMIG) āļĢāđˆāļ§āļĄāļāļąāļš āļ āļēāļ„āļ§āļīāļŠāļēāļˆāļļāļĨāļŠāļĩāļ§āļ§āļīāļ—āļĒāļē
āļ„āļ“āļ°āļ§āļīāļ—āļĒāļēāļĻāļēāļŠāļ•āļĢāđŒ āļĄāļŦāļēāļ§āļīāļ—āļĒāļēāļĨāļąāļĒāļĄāļŦāļīāļ”āļĨ āļˆāļąāļ”āļāļēāļĢāļāļķāļāļ­āļšāļĢāļĄāđ€āļŠāļīāļ‡āļ›āļāļīāļšāļąāļ•āļīāļāļēāļĢāđ€āļĢāļ·āđˆāļ­āļ‡ āļāļēāļĢāļĢāļ°āļšāļļāļŠāļ™āļīāļ”āļ‚āļ­āļ‡āđ€āļŠāļ·āđ‰āļ­āļˆāļļāļĨāļīāļ™āļ—āļĢāļĩāļĒāđŒāļ”āđ‰āļ§āļĒāļ§āļīāļ˜āļĩāļāļēāļĢāļ—āļēāļ‡āļŠāļĩāļ§āļŠāļēāļĢāļŠāļ™āđ€āļ—āļĻ (
Bioinformatics Workshop: Bacterial Species Identification)

āļŦāļąāļ§āļ‚āđ‰āļ­āđƒāļ™āļāļēāļĢāļāļķāļāļ­āļšāļĢāļĄ:
â€Ē Linux command-line for genomics
â€Ē Short- & long-read sequencing data handling
â€Ē Genome assembly & annotation
â€Ē Various sequence-based methods for bacterial species identification: 16S rRNA genes, Kraken2, ANI & in silico dDDH
â€Ē Phylogenomic & species classification
â€Ē Handling unknown isolates & proposing novel species
â€Ē Species identification in metagenomics data

āļāļēāļĢāļ­āļšāļĢāļĄāļ—āļļāļāļŦāļąāļ§āļ‚āđ‰āļ­āļšāļĢāļĢāļĒāļēāļĒāđ€āļ›āđ‡āļ™āļ āļēāļĐāļēāđ„āļ—āļĒāđƒāļ™āļĢāļđāļ›āđāļšāļšāļāļēāļĢāļšāļĢāļĢāļĒāļēāļĒāļ„āļ§āļšāļ„āļđāđˆāļāļąāļšāļāļēāļĢāļāļķāļāļ›āļāļīāļšāļąāļ•āļī āļžāļĢāđ‰āļ­āļĄāļšāļĢāļīāļāļēāļĢāđƒāļŦāđ‰āļ„āļģāļ›āļĢāļķāļāļĐāļēāļŦāļĨāļąāļ‡āļāļēāļĢāļ­āļšāļĢāļĄ (Post-workshop Consultative Support) āļŠāļģāļŦāļĢāļąāļšāļœāļđāđ‰āđ€āļ‚āđ‰āļēāļĢāđˆāļ§āļĄāļ—āļļāļāļ—āđˆāļēāļ™

āļ§āļąāļ™āļ—āļĩāđˆ: 24–26 āļŠāļīāļ‡āļŦāļēāļ„āļĄ 2569

āļŠāļ–āļēāļ™āļ—āļĩāđˆ: āļŦāđ‰āļ­āļ‡āļ›āļĢāļ°āļŠāļļāļĄāļŠāļ•āļēāļ‡āļ„āđŒ āļĄāļ‡āļ„āļĨāļŠāļļāļ‚ āļ„āļ“āļ°āļ§āļīāļ—āļĒāļēāļĻāļēāļŠāļ•āļĢāđŒ āļĄāļŦāļēāļ§āļīāļ—āļĒāļēāļĨāļąāļĒāļĄāļŦāļīāļ”āļĨ(āļžāļāļēāđ„āļ—)

āļ„āđˆāļēāļĨāļ‡āļ—āļ°āđ€āļšāļĩāļĒāļ™:
â€Ē āļ™āļąāļāļĻāļķāļāļĐāļē: 5,000 āļšāļēāļ— (Early bird) / 6,000 āļšāļēāļ— (āļ›āļāļ•āļī)
â€Ē āļšāļļāļ„āļ„āļĨāļ—āļąāđˆāļ§āđ„āļ›: 6,500 āļšāļēāļ— (Early bird) / 7,500 āļšāļēāļ— (āļ›āļāļ•āļī)

Early bird: āļ āļēāļĒāđƒāļ™ 10 āļāļĢāļāļŽāļēāļ„āļĄ 2569
āļ›āļīāļ”āļĢāļąāļšāļŠāļĄāļąāļ„āļĢāļ›āļāļ•āļī: 31 āļāļĢāļāļŽāļēāļ„āļĄ 2569

āļāļēāļĢāļ­āļšāļĢāļĄāļ™āļĩāđ‰āđ€āļŦāļĄāļēāļ°āļŠāļģāļŦāļĢāļąāļšāļ™āļąāļāļĻāļķāļāļĐāļēāļĢāļ°āļ”āļąāļšāļšāļąāļ“āļ‘āļīāļ•āļĻāļķāļāļĐāļē āļ™āļąāļāļ§āļīāļˆāļąāļĒ āđāļĨāļ°āļ™āļąāļāļ§āļīāļ—āļĒāļēāļĻāļēāļŠāļ•āļĢāđŒāļŦāđ‰āļ­āļ‡āļ›āļāļīāļšāļąāļ•āļīāļāļēāļĢāđƒāļ™āļŠāļēāļ‚āļēāļˆāļļāļĨāļŠāļĩāļ§āļ§āļīāļ—āļĒāļēāļ„āļĨāļīāļ™āļīāļ āļ§āļīāļ—āļĒāļēāļĻāļēāļŠāļ•āļĢāđŒāļŠāļīāđˆāļ‡āđāļ§āļ”āļĨāđ‰āļ­āļĄ āļ„āļ§āļēāļĄāļ›āļĨāļ­āļ”āļ āļąāļĒāļ—āļēāļ‡āļ­āļēāļŦāļēāļĢāļŦāļĢāļ·āļ­āļŠāļēāļ‚āļēāļ­āļ·āđˆāļ™āļ—āļĩāđˆāļ•āđ‰āļ­āļ‡āļāļēāļĢāļāļēāļĢāļĢāļ°āļšāļļāļŠāļ™āļīāļ”āļˆāļļāļĨāļīāļ™āļ—āļĢāļĩāļĒāđŒāļ­āļĒāđˆāļēāļ‡āđāļĄāđˆāļ™āļĒāļģ

āļŠāļēāļĄāļēāļĢāļ–āļĨāļ‡āļ—āļ°āđ€āļšāļĩāļĒāļ™āđ„āļ”āđ‰āļ—āļēāļ‡āļŠāđāļāļ™ QR Code āļšāļ™āđ‚āļ›āļŠāđ€āļ•āļ­āļĢāđŒ āļŦāļĢāļ·āļ­ āđ€āļ‚āđ‰āļēāļœāđˆāļēāļ™āļĨāļīāļ‡āļ„āđŒ https://forms.gle/YFsfSVaYnnLs1bMt6

āļ•āļīāļ”āļ•āđˆāļ­āļŠāļ­āļšāļ–āļēāļĄāļ‚āđ‰āļ­āļĄāļđāļĨāđ€āļžāļīāđˆāļĄāđ€āļ•āļīāļĄāđ„āļ”āđ‰āļ—āļĩāđˆ
āļ­āļĩāđ€āļĄāļĨ: cenmig.scmi@gmail.com
āđ€āļšāļ­āļĢāđŒāđ‚āļ—āļĢāļĻāļąāļžāļ—āđŒ: +66 87-358-4255 (K. āļ§āļīāđ‚āļĢāļˆāļ™āđŒ)

Schedule for Bioinformatics Workshop: Bacterial Species Identification

*The schedule can be change in the future.